Microfluidic systems are used in a diverse range of application, often specific to an individual customer. For these reasons, the Fraunhofer Institute for Laser Technology ILT provides a process for manufacturing 3D channel structures, a process that uses digital design data to write complex structures with ultrashort pulsed laser radiation directly into fused silica. Among other things, this maskless direct process has been used to develop glass chips for tasks such as: droplet generation for segmented flows, marker molecule detection in clinical diagnostics or high-throughput screening for biotechnology.